Downloading

Download the latest version of BindigoNet from SourceForge for all UNIX and UNIX-like operating systems (e.g. Mac OS X, Linux, *BSD, etc.)

Installation

To install BindigoNet, extract the tarball and run . ./install.sh (both dots are required) inside the bindigonet directory. This will produce two executable binaries in the directory: bindigo, for RNA-RNA interactions, and bindigo-D, for DNA-DNA interactions. It will also append the required BINPATH environment variable to your .bash_profile.

Usage

Before BindigoNet can be used, it must know the location of thermodynamic parameter files via the BINPATH environment variable, which are located by default in the bin subdirectory of the bindigonet folder. This is automatically done during installation; however, if the bin subdirectory is moved, this variable must be reset. This is most easily accomplished by cd-ing into the bin directory and running . ./binset (again, both dots are required). Alternatively, run

export BINPATH="/full/path/to/bin"
Full usage instructions are provided in the README.